Changelog

Source: NEWS.md

lucida 0.1.7

• May 19, 2026
• update count filtering

lucida 0.1.6

• May 11, 2026
• fixed variable naming in varpart()
• update version for BatchRegression

lucida 0.1.5

• May 5, 2026
• drop failed genes in lucidaOneCluster()
• update version for BatchRegression

lucida 0.1.4

• April 30, 2026
• move readH5AD(), glmFitResponses() and glmmFitResponses() to dependencies
• readH5AD() now supports raw argument
• new out-of-core PCA workflow including residuals(), findHVGs(), topHVGs() and dashSVD()
• update dependencies
• fix bug in dropConstantFactors() in https://github.com/GabrielHoffman/lucida/pull/2

lucida 0.1.3

• April 16, 2026
• in fitVarPart() handle case where full model fails and null model succeeds

lucida 0.1.2

• March 18, 2026
• add check for multiple random effects in lucida() formula
• readH5AD()
• add ondisk argument to
• check that file exists

lucida 0.1.1

• March 17, 2026
• parallelize .glmmFitResponses() and .glmFitResponses()

lucida 0.1.0

• March 9, 2026
• remove dependencies and insert code here

lucida 0.0.4

• March 1, 2026
• shrink residual variance with squeezeVar()

lucida 0.0.3

• Feb 2, 2026
• add support in results() for univariate, joint and difference contrasts
• drop NA values in lucidaOneCluster()