Get name of each cluster as parameter:chrom:cluster
Examples
library(GenomicRanges)
# load data
data('decorateData')
# Evaluate hierarchical clustering
# adjacentCount is the number of adjacent peaks considered in correlation
treeList = runOrderedClusteringGenome( simData, simLocation)
#>
Evaluating:chr20
#>
# Choose cutoffs and return cluster
treeListClusters = createClusters( treeList, method = "meanClusterSize", meanClusterSize=c( 10, 20, 30, 40, 50) )
#> Method:meanClusterSize
# Name of each cluster is parameter:chrom:cluster
getClusterNames( treeListClusters)
#> parameter chrom cluster name
#> 1 10 chr20 1 10_chr20_1
#> 2 10 chr20 2 10_chr20_2
#> 3 10 chr20 3 10_chr20_3
#> 4 10 chr20 4 10_chr20_4
#> 5 10 chr20 5 10_chr20_5
#> 6 10 chr20 6 10_chr20_6
#> 7 10 chr20 7 10_chr20_7
#> 8 10 chr20 8 10_chr20_8
#> 9 10 chr20 9 10_chr20_9
#> 10 10 chr20 10 10_chr20_10
#> 11 10 chr20 11 10_chr20_11
#> 12 10 chr20 12 10_chr20_12
#> 13 10 chr20 13 10_chr20_13
#> 14 10 chr20 14 10_chr20_14
#> 15 10 chr20 15 10_chr20_15
#> 16 10 chr20 16 10_chr20_16
#> 17 10 chr20 17 10_chr20_17
#> 18 10 chr20 18 10_chr20_18
#> 19 10 chr20 19 10_chr20_19
#> 20 10 chr20 20 10_chr20_20
#> 21 10 chr20 21 10_chr20_21
#> 22 10 chr20 22 10_chr20_22
#> 23 10 chr20 23 10_chr20_23
#> 24 10 chr20 24 10_chr20_24
#> 25 10 chr20 25 10_chr20_25
#> 26 10 chr20 26 10_chr20_26
#> 27 10 chr20 27 10_chr20_27
#> 28 10 chr20 28 10_chr20_28
#> 29 10 chr20 29 10_chr20_29
#> 30 10 chr20 30 10_chr20_30
#> 31 10 chr20 31 10_chr20_31
#> 32 10 chr20 32 10_chr20_32
#> 33 10 chr20 33 10_chr20_33
#> 34 10 chr20 34 10_chr20_34
#> 35 10 chr20 35 10_chr20_35
#> 36 10 chr20 36 10_chr20_36
#> 37 10 chr20 37 10_chr20_37
#> 38 10 chr20 38 10_chr20_38
#> 39 10 chr20 39 10_chr20_39
#> 40 10 chr20 40 10_chr20_40
#> 41 10 chr20 41 10_chr20_41
#> 42 10 chr20 42 10_chr20_42
#> 43 10 chr20 43 10_chr20_43
#> 44 10 chr20 44 10_chr20_44
#> 45 10 chr20 45 10_chr20_45
#> 46 20 chr20 1 20_chr20_1
#> 47 20 chr20 2 20_chr20_2
#> 48 20 chr20 3 20_chr20_3
#> 49 20 chr20 4 20_chr20_4
#> 50 20 chr20 5 20_chr20_5
#> 51 20 chr20 6 20_chr20_6
#> 52 20 chr20 7 20_chr20_7
#> 53 20 chr20 8 20_chr20_8
#> 54 20 chr20 9 20_chr20_9
#> 55 20 chr20 10 20_chr20_10
#> 56 20 chr20 11 20_chr20_11
#> 57 20 chr20 12 20_chr20_12
#> 58 20 chr20 13 20_chr20_13
#> 59 20 chr20 14 20_chr20_14
#> 60 20 chr20 15 20_chr20_15
#> 61 20 chr20 16 20_chr20_16
#> 62 20 chr20 17 20_chr20_17
#> 63 20 chr20 18 20_chr20_18
#> 64 20 chr20 19 20_chr20_19
#> 65 20 chr20 20 20_chr20_20
#> 66 20 chr20 21 20_chr20_21
#> 67 20 chr20 22 20_chr20_22
#> 68 30 chr20 1 30_chr20_1
#> 69 30 chr20 2 30_chr20_2
#> 70 30 chr20 3 30_chr20_3
#> 71 30 chr20 4 30_chr20_4
#> 72 30 chr20 5 30_chr20_5
#> 73 30 chr20 6 30_chr20_6
#> 74 30 chr20 7 30_chr20_7
#> 75 30 chr20 8 30_chr20_8
#> 76 30 chr20 9 30_chr20_9
#> 77 30 chr20 10 30_chr20_10
#> 78 30 chr20 11 30_chr20_11
#> 79 30 chr20 12 30_chr20_12
#> 80 30 chr20 13 30_chr20_13
#> 81 30 chr20 14 30_chr20_14
#> 82 30 chr20 15 30_chr20_15
#> 83 40 chr20 1 40_chr20_1
#> 84 40 chr20 2 40_chr20_2
#> 85 40 chr20 3 40_chr20_3
#> 86 40 chr20 4 40_chr20_4
#> 87 40 chr20 5 40_chr20_5
#> 88 40 chr20 6 40_chr20_6
#> 89 40 chr20 7 40_chr20_7
#> 90 40 chr20 8 40_chr20_8
#> 91 40 chr20 9 40_chr20_9
#> 92 40 chr20 10 40_chr20_10
#> 93 40 chr20 11 40_chr20_11
#> 94 50 chr20 1 50_chr20_1
#> 95 50 chr20 2 50_chr20_2
#> 96 50 chr20 3 50_chr20_3
#> 97 50 chr20 4 50_chr20_4
#> 98 50 chr20 5 50_chr20_5
#> 99 50 chr20 6 50_chr20_6
#> 100 50 chr20 7 50_chr20_7
#> 101 50 chr20 8 50_chr20_8
#> 102 50 chr20 9 50_chr20_9