Get coordinates of exons — get_exon_coords • decorate

Get coordinates of exons from ENSEMBL database

Usage

get_exon_coords(ensdb, query, biotypes = c("protein_coding"))

Arguments

ensdb: ENSEMBL database object like EnsDb.Hsapiens.v86
query: GRranges ofject of one interval. "chr20" should be coded as "20"
biotypes: gene biotypes to return

Value

GRanges object of exon locations

Examples

library(EnsDb.Hsapiens.v86)
library(GenomicRanges) 

# gene database
ensdb = EnsDb.Hsapiens.v86

# interval
query = GRanges("20", IRanges(62045027,62164563))

# get GRanges object of exon locations
get_exon_coords( ensdb, query)