Cell counts following interferon treatment

Counts are from single cell RNA-seq data from treated and untreated samples from Kang, et al (2018).

Usage

data(IFNCellCounts)

info

df_cellCounts

hcl

Format

• info is metadata for each sample

• df_cellCounts data.frame of counts for each sample

• hcl cluster of cell types based on pseudobulk expression

An object of class data.frame with 16 rows and 4 columns.

An object of class matrix (inherits from array) with 16 rows and 8 columns.

An object of class hclust of length 7.

References

Kang, Hyun Min, et al. "Multiplexed droplet single-cell RNA-sequencing using natural genetic variation." Nature Biotechnology 36.1 (2018): 89-94.