Plot gene sets in two dimensions based on Jaccard distance
Usage
heatplot(gsc, df_GeneMap, coef, setOverlap = 2, bicluster = TRUE, zlim = NULL)
Arguments
- gsc
GeneSetCollection object
- df_GeneMap
result from getGeneMapping()
- coef
indicate contrast column in df_GeneMap
- setOverlap
keep genes present in at least this many genes sets
- bicluster
apply clustering to rows and columns before plotting
- zlim
scalar. specify max value for color scale