export.cpp File Reference

#include <RcppArmadillo.h>
#include "fastglmm.h"
#include "exportToR_fastlmm.h"
#include "nb_theta.h"
#include "glmmFitFeatures.h"
#include "glmmFitResponses.h"

Functions
List	fastlmm_mm (const arma::vec &y, const arma::mat &X, const arma::mat &U, const arma::vec &s, const arma::vec &weights, const std::string &dcmpMethod, const double &delta, const double &left, const double &right, const double &tol, const double &lambda, const int &nthreads, const bool REML=false)
List	fastlmm_ms (const arma::vec &y, const arma::mat &X, const arma::sp_mat &U, const arma::vec &s, const arma::vec &weights, const std::string &dcmpMethod, const double &delta, const double &left, const double &right, const double &tol, const double &lambda, const int &nthreads, const bool REML=false)
List	fastlmm_sm (const arma::vec &y, const arma::sp_mat &X, const arma::mat &U, const arma::vec &s, const arma::vec &weights, const std::string &dcmpMethod, const double &delta, const double &left, const double &right, const double &tol, const double &lambda, const int &nthreads, const bool REML=false)
List	fastlmm_ss (const arma::vec &y, const arma::sp_mat &X, const arma::sp_mat &U, const arma::vec &s, const arma::vec &weights, const std::string &dcmpMethod, const double &delta, const double &left, const double &right, const double &tol, const double &lambda, const int &nthreads, const bool REML=false)
double	nb_theta (const NumericVector &y, const NumericVector &mu, const double &n, const NumericVector &weights, const double &left=-5, const double &right=20, const double &tol=1e-5)
List	fastglmm_mm (const arma::vec &y, const arma::mat &X, const arma::mat &U, const arma::vec &s, const arma::vec &weights, const arma::vec &offset, const std::string &family, const std::string &dcmpMethod, const double &delta, const double &left, const double &right, const double &tol, const double &tol_eta, const int &maxit, const double &lambda, const int &nthreads, const bool &doCoxReid=true)
List	fastglmm_ms (const arma::vec &y, const arma::mat &X, const arma::sp_mat &U, const arma::vec &s, const arma::vec &weights, const arma::vec &offset, const std::string &family, const std::string &dcmpMethod, const double &delta, const double &left, const double &right, const double &tol, const double &tol_eta, const int &maxit, const double &lambda, const int &nthreads, const bool &doCoxReid=true)

Function Documentation

fastglmm_mm()

List fastglmm_mm	(	const arma::vec &	y,
		const arma::mat &	X,
		const arma::mat &	U,
		const arma::vec &	s,
		const arma::vec &	weights,
		const arma::vec &	offset,
		const std::string &	family,
		const std::string &	dcmpMethod,
		const double &	delta,
		const double &	left,
		const double &	right,
		const double &	tol,
		const double &	tol_eta,
		const int &	maxit,
		const double &	lambda,
		const int &	nthreads,
		const bool &	doCoxReid = true )

fastglmm_ms()

List fastglmm_ms	(	const arma::vec &	y,
		const arma::mat &	X,
		const arma::sp_mat &	U,
		const arma::vec &	s,
		const arma::vec &	weights,
		const arma::vec &	offset,
		const std::string &	family,
		const std::string &	dcmpMethod,
		const double &	delta,
		const double &	left,
		const double &	right,
		const double &	tol,
		const double &	tol_eta,
		const int &	maxit,
		const double &	lambda,
		const int &	nthreads,
		const bool &	doCoxReid = true )

fastlmm_mm()

List fastlmm_mm	(	const arma::vec &	y,
		const arma::mat &	X,
		const arma::mat &	U,
		const arma::vec &	s,
		const arma::vec &	weights,
		const std::string &	dcmpMethod,
		const double &	delta,
		const double &	left,
		const double &	right,
		const double &	tol,
		const double &	lambda,
		const int &	nthreads,
		const bool	REML = false )

fastlmm_ms()

List fastlmm_ms	(	const arma::vec &	y,
		const arma::mat &	X,
		const arma::sp_mat &	U,
		const arma::vec &	s,
		const arma::vec &	weights,
		const std::string &	dcmpMethod,
		const double &	delta,
		const double &	left,
		const double &	right,
		const double &	tol,
		const double &	lambda,
		const int &	nthreads,
		const bool	REML = false )

fastlmm_sm()

List fastlmm_sm	(	const arma::vec &	y,
		const arma::sp_mat &	X,
		const arma::mat &	U,
		const arma::vec &	s,
		const arma::vec &	weights,
		const std::string &	dcmpMethod,
		const double &	delta,
		const double &	left,
		const double &	right,
		const double &	tol,
		const double &	lambda,
		const int &	nthreads,
		const bool	REML = false )

fastlmm_ss()

List fastlmm_ss	(	const arma::vec &	y,
		const arma::sp_mat &	X,
		const arma::sp_mat &	U,
		const arma::vec &	s,
		const arma::vec &	weights,
		const std::string &	dcmpMethod,
		const double &	delta,
		const double &	left,
		const double &	right,
		const double &	tol,
		const double &	lambda,
		const int &	nthreads,
		const bool	REML = false )

nb_theta()

double nb_theta	(	const NumericVector &	y,
		const NumericVector &	mu,
		const double &	n,
		const NumericVector &	weights,
		const double &	left = -5,
		const double &	right = 20,
		const double &	tol = 1e-5 )