Compute normalized counts

Compute normalized counts as counts per million

Usage

computeNormCounts(sce)

Arguments

sce

SingleCellExperiment with counts stored as counts(sce)

Value

matrix of CPM values

Details

This function gives same result as edgeR::cpm(counts(sce), log=FALSE)

See also

also edgeR::cpm()

Examples

library(muscat)
library(SingleCellExperiment)

data(example_sce)

normcounts(example_sce) <- computeNormCounts(example_sce)