Get rownames

BGEN uses sample order from the query, but VCF/BCF/PGEN uses order in file

Usage

# S4 method for class 'GenomicDataStream'
rownames(x, do.NULL = TRUE, prefix = "row")

Arguments

x

GenomicDataStream

do.NULL

not used

prefix

not used

Value

array of string names

Details

Get rownames (i.e. sample names) in order that the samples are extracted

Examples

file <- system.file("extdata", "test.vcf.gz", package = "GenomicDataStream")

obj <- GenomicDataStream(file, "DS", init=TRUE)

rownames(obj)
#> NULL