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Get location of each feature in GenomicDataStream

Usage

getVariantLocations(x)

Arguments

x

GenomicDataStream

Value

get data chunk as list with entries X storing a matrix with features as columns, and info storing information about each feature as rows

Examples

file <- system.file("extdata", "test.vcf.gz", package = "GenomicDataStream")

# initialize
obj <- GenomicDataStream(file, "DS", chunkSize = 5, initialize = TRUE)

getVariantLocations(obj)
#>  [1] "1:10000-10000" "1:11000-11000" "1:12000-12000" "1:13000-13000"
#>  [5] "1:14000-14000" "1:15000-15000" "1:16000-16000" "1:17000-17000"
#>  [9] "1:18000-18000" "1:19000-19000"