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GenomicDataStream
A scalable interface between data and analysis
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#include <stddef.h>
Go to the source code of this file.
Classes | |
struct | ZSTD_inBuffer_s |
struct | ZSTD_outBuffer_s |
Macros | |
#define | ZSTDLIB_API |
#define | ZSTD_VERSION_MAJOR 1 |
#define | ZSTD_VERSION_MINOR 1 |
#define | ZSTD_VERSION_RELEASE 0 |
#define | ZSTD_LIB_VERSION ZSTD_VERSION_MAJOR.ZSTD_VERSION_MINOR.ZSTD_VERSION_RELEASE |
#define | ZSTD_QUOTE(str) |
#define | ZSTD_EXPAND_AND_QUOTE(str) |
#define | ZSTD_VERSION_STRING ZSTD_EXPAND_AND_QUOTE(ZSTD_LIB_VERSION) |
#define | ZSTD_VERSION_NUMBER (ZSTD_VERSION_MAJOR *100*100 + ZSTD_VERSION_MINOR *100 + ZSTD_VERSION_RELEASE) |
Typedefs | |
typedef struct ZSTD_CCtx_s | ZSTD_CCtx |
typedef struct ZSTD_DCtx_s | ZSTD_DCtx |
typedef struct ZSTD_CDict_s | ZSTD_CDict |
typedef struct ZSTD_DDict_s | ZSTD_DDict |
typedef struct ZSTD_inBuffer_s | ZSTD_inBuffer |
typedef struct ZSTD_outBuffer_s | ZSTD_outBuffer |
typedef struct ZSTD_CStream_s | ZSTD_CStream |
typedef struct ZSTD_DStream_s | ZSTD_DStream |
Functions | |
ZSTDLIB_API unsigned | ZSTD_versionNumber (void) |
ZSTDLIB_API size_t | ZSTD_compress (void *dst, size_t dstCapacity, const void *src, size_t srcSize, int compressionLevel) |
ZSTDLIB_API size_t | ZSTD_decompress (void *dst, size_t dstCapacity, const void *src, size_t compressedSize) |
ZSTDLIB_API unsigned long long | ZSTD_getDecompressedSize (const void *src, size_t srcSize) |
ZSTDLIB_API int | ZSTD_maxCLevel (void) |
ZSTDLIB_API size_t | ZSTD_compressBound (size_t srcSize) |
ZSTDLIB_API unsigned | ZSTD_isError (size_t code) |
ZSTDLIB_API const char * | ZSTD_getErrorName (size_t code) |
ZSTDLIB_API ZSTD_CCtx * | ZSTD_createCCtx (void) |
ZSTDLIB_API size_t | ZSTD_freeCCtx (ZSTD_CCtx *cctx) |
ZSTDLIB_API size_t | ZSTD_compressCCtx (ZSTD_CCtx *ctx, void *dst, size_t dstCapacity, const void *src, size_t srcSize, int compressionLevel) |
ZSTDLIB_API ZSTD_DCtx * | ZSTD_createDCtx (void) |
ZSTDLIB_API size_t | ZSTD_freeDCtx (ZSTD_DCtx *dctx) |
ZSTDLIB_API size_t | ZSTD_decompressDCtx (ZSTD_DCtx *ctx, void *dst, size_t dstCapacity, const void *src, size_t srcSize) |
ZSTDLIB_API size_t | ZSTD_compress_usingDict (ZSTD_CCtx *ctx, void *dst, size_t dstCapacity, const void *src, size_t srcSize, const void *dict, size_t dictSize, int compressionLevel) |
ZSTDLIB_API size_t | ZSTD_decompress_usingDict (ZSTD_DCtx *dctx, void *dst, size_t dstCapacity, const void *src, size_t srcSize, const void *dict, size_t dictSize) |
ZSTDLIB_API ZSTD_CDict * | ZSTD_createCDict (const void *dict, size_t dictSize, int compressionLevel) |
ZSTDLIB_API size_t | ZSTD_freeCDict (ZSTD_CDict *CDict) |
ZSTDLIB_API size_t | ZSTD_compress_usingCDict (ZSTD_CCtx *cctx, void *dst, size_t dstCapacity, const void *src, size_t srcSize, const ZSTD_CDict *cdict) |
ZSTDLIB_API ZSTD_DDict * | ZSTD_createDDict (const void *dict, size_t dictSize) |
ZSTDLIB_API size_t | ZSTD_freeDDict (ZSTD_DDict *ddict) |
ZSTDLIB_API size_t | ZSTD_decompress_usingDDict (ZSTD_DCtx *dctx, void *dst, size_t dstCapacity, const void *src, size_t srcSize, const ZSTD_DDict *ddict) |
ZSTDLIB_API ZSTD_CStream * | ZSTD_createCStream (void) |
ZSTDLIB_API size_t | ZSTD_freeCStream (ZSTD_CStream *zcs) |
ZSTDLIB_API size_t | ZSTD_CStreamInSize (void) |
ZSTDLIB_API size_t | ZSTD_CStreamOutSize (void) |
ZSTDLIB_API size_t | ZSTD_initCStream (ZSTD_CStream *zcs, int compressionLevel) |
ZSTDLIB_API size_t | ZSTD_compressStream (ZSTD_CStream *zcs, ZSTD_outBuffer *output, ZSTD_inBuffer *input) |
ZSTDLIB_API size_t | ZSTD_flushStream (ZSTD_CStream *zcs, ZSTD_outBuffer *output) |
ZSTDLIB_API size_t | ZSTD_endStream (ZSTD_CStream *zcs, ZSTD_outBuffer *output) |
ZSTDLIB_API ZSTD_DStream * | ZSTD_createDStream (void) |
ZSTDLIB_API size_t | ZSTD_freeDStream (ZSTD_DStream *zds) |
ZSTDLIB_API size_t | ZSTD_DStreamInSize (void) |
ZSTDLIB_API size_t | ZSTD_DStreamOutSize (void) |
ZSTDLIB_API size_t | ZSTD_initDStream (ZSTD_DStream *zds) |
ZSTDLIB_API size_t | ZSTD_decompressStream (ZSTD_DStream *zds, ZSTD_outBuffer *output, ZSTD_inBuffer *input) |
#define ZSTD_EXPAND_AND_QUOTE | ( | str | ) |
#define ZSTD_LIB_VERSION ZSTD_VERSION_MAJOR.ZSTD_VERSION_MINOR.ZSTD_VERSION_RELEASE |
#define ZSTD_QUOTE | ( | str | ) |
#define ZSTD_VERSION_MAJOR 1 |
#define ZSTD_VERSION_MINOR 1 |
#define ZSTD_VERSION_NUMBER (ZSTD_VERSION_MAJOR *100*100 + ZSTD_VERSION_MINOR *100 + ZSTD_VERSION_RELEASE) |
#define ZSTD_VERSION_RELEASE 0 |
#define ZSTD_VERSION_STRING ZSTD_EXPAND_AND_QUOTE(ZSTD_LIB_VERSION) |
#define ZSTDLIB_API |
Copyright (c) 2016-present, Yann Collet, Facebook, Inc. All rights reserved.
This source code is licensed under the BSD-style license found in the LICENSE file in the root directory of this source tree. An additional grant of patent rights can be found in the PATENTS file in the same directory.
ZSTD_DLL_EXPORT : Enable exporting of functions when building a Windows DLL
typedef struct ZSTD_CCtx_s ZSTD_CCtx |
Compression context
typedef struct ZSTD_CDict_s ZSTD_CDict |
ZSTD_createCDict() : Create a digested dictionary, ready to start compression operation without startup delay. dict can be released after ZSTD_CDict creation
typedef struct ZSTD_CStream_s ZSTD_CStream |
typedef struct ZSTD_DCtx_s ZSTD_DCtx |
Decompression context
typedef struct ZSTD_DDict_s ZSTD_DDict |
ZSTD_createDDict() : Create a digested dictionary, ready to start decompression operation without startup delay. dict can be released after creation
typedef struct ZSTD_DStream_s ZSTD_DStream |
typedef struct ZSTD_inBuffer_s ZSTD_inBuffer |
typedef struct ZSTD_outBuffer_s ZSTD_outBuffer |
ZSTDLIB_API size_t ZSTD_compress | ( | void * | dst, |
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | srcSize, | ||
int | compressionLevel ) |
ZSTD_compress() : Compresses src content as a single zstd compressed frame into already allocated dst. Hint : compression runs faster if dstCapacity >= ZSTD_compressBound(srcSize).
ZSTDLIB_API size_t ZSTD_compress_usingCDict | ( | ZSTD_CCtx * | cctx, |
void * | dst, | ||
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | srcSize, | ||
const ZSTD_CDict * | cdict ) |
ZSTD_compress_usingCDict() : Compression using a digested Dictionary. Faster startup than ZSTD_compress_usingDict(), recommended when same dictionary is used multiple times. Note that compression level is decided during dictionary creation
ZSTDLIB_API size_t ZSTD_compress_usingDict | ( | ZSTD_CCtx * | ctx, |
void * | dst, | ||
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | srcSize, | ||
const void * | dict, | ||
size_t | dictSize, | ||
int | compressionLevel ) |
ZSTD_compress_usingDict() : Compression using a predefined Dictionary (see dictBuilder/zdict.h). Note : This function load the dictionary, resulting in significant startup delay.
ZSTDLIB_API size_t ZSTD_compressBound | ( | size_t | srcSize | ) |
maximum compressed size in worst case scenario
ZSTDLIB_API size_t ZSTD_compressCCtx | ( | ZSTD_CCtx * | ctx, |
void * | dst, | ||
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | srcSize, | ||
int | compressionLevel ) |
ZSTD_compressCCtx() : Same as ZSTD_compress(), requires an allocated ZSTD_CCtx (see ZSTD_createCCtx())
ZSTDLIB_API size_t ZSTD_compressStream | ( | ZSTD_CStream * | zcs, |
ZSTD_outBuffer * | output, | ||
ZSTD_inBuffer * | input ) |
ZSTDLIB_API ZSTD_CCtx * ZSTD_createCCtx | ( | void | ) |
ZSTDLIB_API ZSTD_CDict * ZSTD_createCDict | ( | const void * | dict, |
size_t | dictSize, | ||
int | compressionLevel ) |
ZSTDLIB_API ZSTD_CStream * ZSTD_createCStream | ( | void | ) |
ZSTDLIB_API ZSTD_DCtx * ZSTD_createDCtx | ( | void | ) |
ZSTDLIB_API ZSTD_DDict * ZSTD_createDDict | ( | const void * | dict, |
size_t | dictSize ) |
ZSTDLIB_API ZSTD_DStream * ZSTD_createDStream | ( | void | ) |
ZSTDLIB_API size_t ZSTD_CStreamInSize | ( | void | ) |
recommended size for input buffer
ZSTDLIB_API size_t ZSTD_CStreamOutSize | ( | void | ) |
recommended size for output buffer. Guarantee to successfully flush at least one complete compressed block in all circumstances.
ZSTDLIB_API size_t ZSTD_decompress | ( | void * | dst, |
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | compressedSize ) |
ZSTD_decompress() : compressedSize : must be the exact size of a single compressed frame. dstCapacity is an upper bound of originalSize. If user cannot imply a maximum upper bound, it's better to use streaming mode to decompress data.
ZSTDLIB_API size_t ZSTD_decompress_usingDDict | ( | ZSTD_DCtx * | dctx, |
void * | dst, | ||
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | srcSize, | ||
const ZSTD_DDict * | ddict ) |
ZSTD_decompress_usingDDict() : Decompression using a digested Dictionary Faster startup than ZSTD_decompress_usingDict(), recommended when same dictionary is used multiple times.
ZSTDLIB_API size_t ZSTD_decompress_usingDict | ( | ZSTD_DCtx * | dctx, |
void * | dst, | ||
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | srcSize, | ||
const void * | dict, | ||
size_t | dictSize ) |
ZSTD_decompress_usingDict() : Decompression using a predefined Dictionary (see dictBuilder/zdict.h). Dictionary must be identical to the one used during compression. Note : This function load the dictionary, resulting in significant startup delay
ZSTDLIB_API size_t ZSTD_decompressDCtx | ( | ZSTD_DCtx * | ctx, |
void * | dst, | ||
size_t | dstCapacity, | ||
const void * | src, | ||
size_t | srcSize ) |
ZSTD_decompressDCtx() : Same as ZSTD_decompress(), requires an allocated ZSTD_DCtx (see ZSTD_createDCtx())
ZSTDLIB_API size_t ZSTD_decompressStream | ( | ZSTD_DStream * | zds, |
ZSTD_outBuffer * | output, | ||
ZSTD_inBuffer * | input ) |
ZSTDLIB_API size_t ZSTD_DStreamInSize | ( | void | ) |
recommended size for input buffer
ZSTDLIB_API size_t ZSTD_DStreamOutSize | ( | void | ) |
recommended size for output buffer. Guarantee to successfully flush at least one complete block in all circumstances.
ZSTDLIB_API size_t ZSTD_endStream | ( | ZSTD_CStream * | zcs, |
ZSTD_outBuffer * | output ) |
ZSTDLIB_API size_t ZSTD_flushStream | ( | ZSTD_CStream * | zcs, |
ZSTD_outBuffer * | output ) |
ZSTDLIB_API size_t ZSTD_freeCCtx | ( | ZSTD_CCtx * | cctx | ) |
ZSTDLIB_API size_t ZSTD_freeCDict | ( | ZSTD_CDict * | CDict | ) |
ZSTDLIB_API size_t ZSTD_freeCStream | ( | ZSTD_CStream * | zcs | ) |
ZSTDLIB_API size_t ZSTD_freeDCtx | ( | ZSTD_DCtx * | dctx | ) |
ZSTDLIB_API size_t ZSTD_freeDDict | ( | ZSTD_DDict * | ddict | ) |
ZSTDLIB_API size_t ZSTD_freeDStream | ( | ZSTD_DStream * | zds | ) |
ZSTDLIB_API unsigned long long ZSTD_getDecompressedSize | ( | const void * | src, |
size_t | srcSize ) |
ZSTD_getDecompressedSize() : 'src' is the start of a zstd compressed frame.
ZSTDLIB_API const char * ZSTD_getErrorName | ( | size_t | code | ) |
provides readable string from an error code
ZSTDLIB_API size_t ZSTD_initCStream | ( | ZSTD_CStream * | zcs, |
int | compressionLevel ) |
ZSTDLIB_API size_t ZSTD_initDStream | ( | ZSTD_DStream * | zds | ) |
ZSTDLIB_API unsigned ZSTD_isError | ( | size_t | code | ) |
tells if a size_t function result is an error code
ZSTDLIB_API int ZSTD_maxCLevel | ( | void | ) |
maximum compression level available
ZSTDLIB_API unsigned ZSTD_versionNumber | ( | void | ) |