GenomicDataStream
A scalable interface between data and analysis
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Here is a list of all class members with links to the classes they belong to:
A
B
C
D
F
G
I
M
N
O
P
R
S
U
V
~
- a -
A1 :
gds::VariantInfo
A2 :
gds::VariantInfo
addVariant() :
gds::VariantInfo
addVariants() :
gds::VariantInfo
append() :
gds::VariantInfo
atEndOfStream :
gds::BoundDataStream
- b -
bgenstream() :
gds::bgenstream
BoundDataStream() :
gds::BoundDataStream
- c -
CHROM :
gds::VariantInfo
chunkSize :
gds::Param
clear() :
gds::VariantInfo
- d -
d :
PCA
DataChunk() :
gds::DataChunk< matType >
DataInfo() :
gds::DataInfo
DataTable() :
gds::DataTable
DelayedStream() :
gds::DelayedStream
dst :
ZSTD_outBuffer_s
- f -
featureIds :
PCA
featuresRead :
gds::BoundDataStream
field :
gds::Param
file :
gds::Param
filenameIdxGlobal :
gds::bgenstream
fileSamples :
gds::Param
fileType :
gds::Param
- g -
generate() :
StandardNormalRandomHelper< MatrixType, ScalarType, RandomEngineType >
,
StandardNormalRandomHelper< MatrixType, RealType< MatrixType >, RandomEngineType >
,
StandardNormalRandomHelper< MatrixType, std::complex< RealType< MatrixType > >, RandomEngineType >
GenomicDataStream() :
gds::GenomicDataStream
GenomicDataStreamParallel() :
GenomicDataStreamParallel< T >
GenomicRanges() :
gds::GenomicRanges
get_chrom() :
gds::GenomicRanges
get_end() :
gds::GenomicRanges
get_start() :
gds::GenomicRanges
getChromPos() :
gds::VariantInfo
getChromRanges() :
gds::bgenstream
,
gds::DelayedStream
,
gds::GenomicDataStream
,
gds::pgenstream
,
gds::VariantSet
,
gds::vcfstream
getData() :
gds::DataChunk< matType >
getFeatureName() :
gds::DataInfo
getFeatureNames() :
gds::DataInfo
getIndeces() :
gds::VariantSet
getInfo() :
gds::DataChunk< matType >
getInterval() :
gds::VariantInfo
getMAF() :
gds::GenomicDataStream
getMinVariance() :
gds::GenomicDataStream
getNextChunk() :
gds::bgenstream
,
gds::DelayedStream
,
gds::GenomicDataStream
,
gds::pgenstream
,
gds::vcfstream
getNVariantsBeforeFilter() :
gds::VariantInfo
getParam() :
gds::GenomicDataStream
getRegions() :
gds::Param
,
gds::VariantInfo
getSampleNames() :
gds::bgenstream
,
gds::DelayedStream
,
gds::GenomicDataStream
,
gds::pgenstream
,
gds::vcfstream
getStreamType() :
gds::bgenstream
,
gds::DelayedStream
,
gds::GenomicDataStream
,
gds::pgenstream
,
gds::vcfstream
getVariantIDs() :
gds::VariantSet
getWithinIndeces() :
gds::GenomicRanges
- i -
ID :
gds::DataInfo
index :
gds::point
isWithin() :
gds::GenomicRanges
- m -
MAF :
gds::Param
MatrixInfo() :
gds::MatrixInfo
minVariance :
gds::Param
missingToMean :
gds::Param
- n -
n_rows() :
gds::DelayedStream
n_samples() :
gds::bgenstream
,
gds::DelayedStream
,
gds::GenomicDataStream
,
gds::pgenstream
,
gds::vcfstream
nVariantsBeforeFilter :
gds::VariantInfo
- o -
operator=() :
gds::DataChunk< matType >
- p -
Param() :
gds::Param
param :
gds::GenomicDataStream
PCA() :
PCA
pgenstream() :
gds::pgenstream
point() :
gds::point
POS :
gds::VariantInfo
pos :
ZSTD_inBuffer_s
,
ZSTD_outBuffer_s
position :
gds::point
print() :
gds::Param
processChunks() :
GenomicDataStreamParallel< T >
ptr :
gds::BoundDataStream
- r -
regions :
gds::Param
retainVariants() :
gds::VariantInfo
- s -
sampleNames :
gds::VariantInfo
samples :
gds::Param
setChunkSize() :
gds::GenomicDataStream
setField() :
gds::Param
setMinVariance() :
gds::GenomicDataStream
setRegions() :
gds::bgenstream
,
gds::DelayedStream
,
gds::GenomicDataStream
,
gds::Param
,
gds::pgenstream
,
gds::vcfstream
setRowNames() :
gds::MatrixInfo
setSamplesFile() :
gds::Param
size() :
gds::DataInfo
,
gds::GenomicRanges
,
ZSTD_inBuffer_s
,
ZSTD_outBuffer_s
src :
ZSTD_inBuffer_s
subset() :
gds::MatrixInfo
- u -
u :
PCA
- v -
v :
PCA
VariantInfo() :
gds::VariantInfo
VariantSet() :
gds::VariantSet
variantToString() :
gds::vcfstream
vcfstream() :
gds::vcfstream
- ~ -
~bgenstream() :
gds::bgenstream
~DataChunk() :
gds::DataChunk< matType >
~DelayedStream() :
gds::DelayedStream
~GenomicDataStream() :
gds::GenomicDataStream
~pgenstream() :
gds::pgenstream
~vcfstream() :
gds::vcfstream
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